https://publish.kne-publishing.com/index.php/IJM/issue/feedIranian Journal of Microbiology2025-04-20T12:29:20+00:00Nahid Gavilin.gavili@knowledgee.comOpen Journal Systems<p>The "<strong>Iranian Journal of Microbiology</strong> (IJM) "is the official scientific quarterly publication of the <strong>Iranian Society of Microbiology.</strong> The areas that are covered by IJM are medical, veterinary, food and water, applied and environmental microbiology. It accepts Original Papers, Review Articles, Short Communications and Letters to the Editor in the fields of Microbiology.</p> <p><strong data-stringify-type="bold">All the manuscripts should be submitted through the Journal Primary Website at <a href="https://ijm.tums.ac.ir/index.php/ijm/about/submissions">https://ijm.tums.ac.ir/index.php/ijm/about/submissions</a></strong></p>https://publish.kne-publishing.com/index.php/IJM/article/view/18380Revealing COVID-19 breakthrough infection rates among vaccinated individuals at a tertiary care centre in South India2025-04-20T12:23:57+00:00Vanathy Kandhasamynone@none.comRamya Priyadarshininone@none.comNamrata Krishna Bhosalenone@none.comRaji Ramachandran Pillainone@none.comMalarvizhi Ramalingamnone@none.comAgiesh Kumar Balakrishna Pillainone@none.comEzhumalai Govindasamynone@none.comJoshy Maducolil Easownone@none.com<p><strong>Background and Objectives: </strong>The COVID-19 pandemic was mitigated by the rapid development and deployment of vac- cines. While vaccines reduce infection severity, breakthrough infections (BTIs) still occur. The CDC defines BTI as a pos- itive SARS-CoV-2 test ≥14 days post-vaccination. This study investigates the occurrence of COVID-19 BTIs at a tertiary care hospital in Puducherry, South India.</p> <p><strong>Materials and Methods: </strong>This retrospective study analysed hospital tested qRT-PCR data of individuals from the ICMR</p> <p>portal (March 2021–March 2022). Demographic and vaccination details were extracted.</p> <p><strong>Results: </strong>Among 8001 tested individuals, 1452 were vaccinated. The BTI rate decreased from 16.6% to 1.2% after the first dose and from 58% to 40% after the second one. Odds ratio indicated a 74% reduction in infection risk for vaccinated indi- viduals compared to unvaccinated. Males had higher infection rates than females, regardless of vaccination status.</p> <p><strong>Conclusion: </strong>Our study demonstrates a higher BTI rate after one vaccine dose compared to two doses. The BTI rate also increased four months post-vaccination, even with two doses, potentially due to waning immunity and the emergence of new variants. Therefore, continued adherence to preventive measures in conjunction with vaccination is crucial for minimizing COVID-19 transmission.</p>2025-04-12T08:44:19+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18381Design and assessment of a multiplex real-time PCR method for simultaneous detection and differentiation of COVID-19 and Influenza A/B2025-04-20T12:24:14+00:00Nafiseh Fotrosnone@none.comReihaneh Bashirinone@none.comSamira Mohammadi-Yeganehnone@none.comMahdi Paryannone@none.com<p><strong>Background and Objectives: </strong>Viral infections of the respiratory system are a major public problem due to their ease of spread, pandemic potential, and significant rate of death. Diagnosing these infections requires laboratory testing, as clinical symptoms alone are often insufficient. Influenza A, Influenza B, and COVID-19 are common infections that burden the population, especially during winter. We developed a multiplex real-time PCR method to simultaneously detect Influenza A and B, as well as COVID-19. Compared to existing detection kits, it offers higher accuracy, lower costs, and faster results, making it an efficient diagnostic tool.</p> <p><strong>Materials and Methods: </strong>We designed primer/TaqMan probes for the M2 gene of Influenza A, N gene of SARS-CoV-2, and NS1 gene of Influenza B. Reaction components were optimized and functional parameters were tested using standard samples with known viral copy numbers.</p> <p><strong>Results: </strong>The method’s detection limit is 10 copies for Influenza A and B, and 60 for SARS-CoV-2. Sensitivity and specificity for Influenza A are 88% and 100%, for Influenza B, 95.6% and 100%, and for SARS-CoV-2, 90.4% and 100%.</p> <p><strong>Conclusion: </strong>This multiplex real-time PCR method can accurately detect and distinguish SARS-CoV-2, Influenza B, and Influenza A infections.</p>2025-04-12T08:48:49+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18394Insights into global transcriptomic profile of biofilm producing Staphylococcus aureus clinical isolates from chronic foot ulcers2025-04-20T12:24:30+00:00Kumar Ebineshannone@none.comAparna Srikantamnone@none.comMichael Sukumar Pallapatinone@none.com<p><strong>Background and Objectives: </strong><em>Staphylococcus aureus (S. aureus) </em>is one of the predominant biofilm producing pathogen in leprosy foot ulcer (LFU). The objective of this study was to identify the transcriptome profile through Next Generation Sequencing (NGS) approach in mature biofilm of leprosy foot ulcer isolate of <em>S. aureus.</em></p> <p><strong>Materials and Methods: </strong>A cross-sectional study was conducted from July 2019 to May 2022 and a total of twenty-seven <em>S. aureus </em>isolates were collected from the foot ulcers of leprosy patients. All <em>S. aureus </em>isolates were screened for biofilm formation in vitro. Initially, two potential biofilm producing isolates and two planktonic cells were selected for transcriptome comparison.</p> <p><strong>Results: </strong>With reference to transcriptome profile, out of 2,842 genes, 2,688 genes in mature biofilm and 2,685 genes in planktonic cells were expressed. Among them, forty-five differentially expressed genes with 32 and 13 genes showing up and down regulation respectively were obtained.</p> <p><strong>Conclusion: </strong>The research emphasizes the need for continued exploration into the mechanisms of biofilm formation by <em>S. aureus</em>, particularly in the context of leprosy foot ulcers. Understanding these pathways not only aids in grasping the com- plexity of chronic infections but also paves the way for innovative therapeutic approaches aimed at mitigating biofilm-related complications in clinical settings.</p>2025-04-12T10:55:12+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18396Protective effects of Staphylococcal Enterotoxin B (SEB) toxoid on lung and liver tissue integrity in rats during systemic infection2025-04-20T12:24:49+00:00Dhafer Rasheed Al-Fetlynone@none.comAtiaf Ghanim Rhyafnone@none.comHala Abbas Najinone@none.com<p><strong>Background and Objectives: </strong>Staphylococcal enterotoxin B (SEB), a potent superantigenic toxin produced by <em>Staphylococ- cus aureus (S. aureus)</em>, plays a crucial role in <em>S. aureus </em>systemic infection. This investigation sought to determine whether immunising animals with SEB toxoid could protect against an experimental acute systemic infection caused by <em>S. aureus. </em></p> <p><strong>Materials and Methods: </strong>This study involved three groups of animals: one group was administered with SEB toxoid, and the second group was administered with intramuscular injections of normal saline, after which both were subjected to systemic <em>S. aureus </em>infection. The third group served as the negative control. After two weeks, the outcomes of the experimental systemic infection demonstrated that SEB immunisation significantly shielded organs (lung and liver) from damage in comparison to the control group.</p> <p><strong>Results: </strong>Regarding the histopathological analysis of liver and lung tissues, the control group showed minimal alterations, in- dicating a normal tissue state. Infected individuals exhibited severe pathology, including inflammation, necrosis, and fibrosis. The immunised group displayed a mixed profile with elevated inflammation but lower necrosis and fibrosis. Immunisation mitigated pathological changes induced by infection, fostering a more controlled response.</p> <p><strong>Conclusion: </strong>SEB plays an important role in <em>S. aureus </em>pathogenesis and immunisation, and this toxoid might protect against fatal infections of <em>S. aureus.</em></p>2025-04-12T00:00:00+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18382Resistance profiles of Staphylococcus aureus isolates against frequently used antibiotics at private sector laboratories in Jordan2025-04-20T12:25:09+00:00Rania Al-Groomnone@none.comGhina Al-Sarairehnone@none.comSultan Ayesh Mohammed Saghirnone@none.comMohd Sajjad Ahmad Khannone@none.comAreej M. Almanaseernone@none.comLaila Alswalhanone@none.comWesal Alraeinone@none.comDalia Abu Al-Haijaanone@none.comMaha Hdaibnone@none.comAnas Da'mehnone@none.comShereen Z Burjaqnone@none.comOmar Al-Dmournone@none.comFuad Alhawaratnone@none.com<p><strong>Background and Objectives: </strong><em>Staphylococcus aureus (S. aureus) </em>is one of the most important pathogens, responsible for a range of infections. This study aimed to assess resistance patterns in <em>S. aureus </em>isolates obtained from certain private-sector laboratories against commonly used antimicrobial agents.</p> <p><strong>Materials and Methods: </strong>The process involved collecting various samples from several private laboratories and then identi- fying <em>S. aureus </em>isolates using biochemical characterization. The antibiotic susceptibility of these isolates was determined by disc diffusion method . Furthermore, Rt-PCR was employed to identify two genes namely the methicillin/oxacillin resistance genes (<em>mecA</em>), and (<em>SCCmec</em>).</p> <p><strong>Results: </strong>The findings of the current study exhibited that females constituted a larger proportion of the participants (59.1%) compared to males (40.9%), with a mean participant age of 40.82 years. Gram-positive bacteria were more prevalent (71.3%) than Gram-negative bacteria (18.3%), with <em>S. aureus </em>being the most frequent isolate (60.9%). Urine samples represented the highest collected sample type (47.8%). Out of the 115 bacterial isolates, 85.2% exhibited multidrug resistance to antibiotics such as cefazolin, gentamicin, vancomycin, and ceftazidime. Clindamycin was the most effective antibiotic, with a sensitivity rate of 62.9%, followed by teicoplanin and meropenem, each with a sensitivity rate of 52.9%. Methicillin-resistant <em>Staphylo-</em><em>coccus aureus </em>(MRSA) strains were susceptabile to vancomycin and teicoplanin. The methicillin/oxacillin resistant isolates showed significant association with <em>mecA </em>and <em>SCCA </em>genes.</p> <p><strong>Conclusion: </strong>This study highlighted the multi-drug resistance in <em>S. aureus </em>isolates, stressing the need for stringent antibiotic stewardship, continuous surveillance, and further research into alternative treatments, including novel antibiotics and com- bination therapy, to combat resistant strains.</p>2025-04-12T08:59:43+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18383Identification and antimicrobial susceptibility testing of Streptococcus agalactiae associated urinary tract infections using VITEK 2 system2025-04-20T12:25:26+00:00Parviz Mohajerinone@none.comHossein Faridafsharnone@none.comSara Kootinone@none.com<p><strong>Background and Objectives: </strong>As a Gram-positive bacterium, <em>Streptococcus agalactiae </em>or Group B Streptococcus (GBS) is normally found as a transient flora of the gastrointestinal and genitourinary tracts of women. The high prevalence of GBS in the urethra warrants investigation of UTIs and antibiotic resistance frequency associated with GBS. Given the paucity of re- search on antibiotic resistance of GBS in Iran, the present study investigated the UTIs associated with GBS and the antibiotic susceptibility patterns associated with GBS.</p> <p><strong>Materials and Methods: </strong>This study included 65 GBS strains collected from urine samples obtained from the Bouali Labo- ratory Complex, one of the largest laboratories in western Iran. VITEK 2 GP ID cards were used to identify all GBS isolates. VITEK 2 susceptibility testing for Gram-positive bacteria was performed according to the manufacturer's instructions using the AST-ST card. MIC method was performed after the detection of GBS strains.</p> <p><strong>Results: </strong>We found that 53 (81.5%) of the GBS isolates showed resistance to tetracycline; 47 (72.3%), 40 (61.5%), and 30 (46.15%) of these had a resistance to erythromycin, clindamycin and ampicillin respectively.</p> <p><strong>Conclusion: </strong>In the present study, the VITEK 2 system was validated as a user-friendly system that can serve as a rapid and accurate tool for identification and antimicrobial susceptibility testing of GBS.</p> <p> </p>2025-04-12T09:07:06+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18384Activity of cefiderocol on extensively drug-resistant Pseudomonas aeruginosa from burn wound infections in Mansoura, Egypt2025-04-20T12:25:43+00:00Rasha El-Mahdynone@none.comAhmed Mostafanone@none.comNora El-Tantawynone@none.comRaghdaa Shriefnone@none.com<p><strong>Background and Objectives: </strong>Increased <em>Pseudomonas aeruginosa </em>antibiotic resistance limits treatment options and is as- sociated with a higher level of mortality and mordacity. The purpose of this research was to identify class 1 and 2 integrons, carbapenemase, <em>SHV</em>, and <em>TEM </em>genes in extensively drug-resistant (XDR) <em>P. aeruginosa </em>isolated from infected burns and evaluate their in vitro cefiderocol activity.</p> <p><strong>Results:</strong> From the 110 P. aeruginosa, 54 isolates (49%) were XDR. TEM gene was detected in 35 isolates. Among XDR iso- lates, carbapenemase genes were detected in 31.5%, with NDM being predominant Thirty XDR isolates had class1 integrons. All isolates were sensitive to cefiderocol and its MIC /MIC was 0.5/1.5mg/L (range 0.064-1.5mg/L).</p> <p><strong>Materials and Methods: </strong>By using the disc diffusion method, the antimicrobial susceptibility of 110 <em>P. aeruginosa </em>isolates collected from infected burns were evaluated. XDR <em>P. aeruginosa </em>were screened phenotypically for carbapenemase and extended spectrum β-lactamases (ESBLs) production. Both MIC Test Strip and disc diffusion were employed to test the cefiderocol susceptibility. PCR was used to assess carbapenemase, <em>SHV </em>and <em>TEM </em>genes and integrons class 1 and 2.</p> <p><strong>Conclusion: </strong>Nearly half the <em>P. aeruginosa </em>isolates from burn infections were extensively drug-resistant. Cefiderocol's in vitro activity demonstrated that it is a promising therapy alternative for treating extensively drug-resistant <em>P. aeruginosa </em>in burn patients.</p> <p> </p>2025-04-12T09:29:53+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18385Evaluating the susceptibility to ceftazidime-avibactam in clinical isolates of Klebsiella pneumoniae and Pseudomonas aeruginosa recovered from an apex medical hospital in north India2025-04-20T12:26:00+00:00Nargis Balinone@none.com Nargis Balinone@none.comBiswajyoti Borkakotynone@none.comRoseleen Balinone@none.comAnjum Ara Mirnone@none.comZubair Telinone@none.comQounser Nisarnone@none.comTantray Faisalnone@none.com<p><strong>Background and Objectives: </strong>We assessed the susceptibility of ceftazidime+avibactam (CZA/AVI) in <em>Klebsiella pneumoni- ae </em>and <em>Pseudomonas aeruginosa </em>isolated from intensive care units of our hospital.</p> <p><strong>Materials and Methods: </strong>Clinical samples from Jan 2022 to Dec 2023 at SKIMS Soura, were processed for the recovery of <em>K. pneumoniae </em>and <em>P. aeruginosa</em>. Susceptibility testing was done by disc diffusion (DD) method and minimum inhibitory concentration (MIC) for CZA/AVI and meropenem was assessed using E-test strips. Categorical agreement (CA), very major errors (VME), major errors (ME) and minor errors (mE) between DD and MIC were measured. Statistical analyses were performed using SPSS version 22.0.</p> <p><strong>Results: </strong>A total of 111 <em>K. pneumoniae </em>and 81 <em>P. aeruginosa </em>were part of the study. Of these, 56.8% <em>K. pneumoniae </em>and 45.7% <em>P. aeruginosa </em>isolates were susceptible to CZA/AVI. MIC of CZA/AVI for <em>K. pneumoniae </em>ranged from 0.125 to ≥ 256 μg/ml and for <em>P. aeruginosa </em>it ranged from 0.032 to 128 μg/ml. CA was 97.29% between DD and E-Test for CZA/AVI in <em>K. pneumoniae </em>isolates, with a ME of 2.70%. For <em>P. aeruginosa </em>CA between DD and E-Test for CZA/AVI was 98.76% with a VME of 1.23%. MIC values of meropenem were higher than CZA/AVI even in sensitive isolates.</p> <p><strong>Conclusion: </strong>CZA/AVI shows good in-vitro activity against clinical isolates of <em>K. pneumoniae </em>and <em>P. aeruginosa </em>and can be part of empirical therapy for treating infections caused by these bacteria.</p>2025-04-12T09:58:29+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18386The evaluation of antimicrobial resistance rates in infections caused by uropathogenic Escherichia coli strains collected from the south of Lebanon2025-04-20T12:26:18+00:00Sajida Chreimnone@none.comSeyed Masoud Hosseininone@none.comAbdallah Medlejnone@none.comMahdi Tarhininone@none.com<p><strong>Background and Objectives: </strong>Uropathogenic <em>Escherichia coli </em>(UPEC) is a leading cause of urinary tract infections, which are a significant public health concern worldwide. Antibiotic resistance among UPEC isolates is an increasing challenge, necessitating a better understanding of the resistance patterns and underlying genetic mechanisms. This study examined the prevalence of antibiotic resistance phenotypes and the detection of specific resistance genes among patients with UPEC infections in Sheikh Ragheb Harb University Hospital in south Lebanon.</p> <p><strong>Materials and Methods:</strong> Antimicrobial resistance phenotype of 104 urine samples was tested to determine the resistance percentages for various antibiotics including ampicillin, gentamicin, ciprofloxacin, tetracycline, bactrim, meropenem, and imipenem using disk diffusion test. Additionally, molecular analysis like polymerase chain reaction (PCR) was performed to detect the presence of bla SHV , qnrA, tetA, dfrA1, aac3, bla and bla IMP resistance genes.</p> <p><strong>Results:</strong> The antimicrobial resistance testing revealed the following resistance percentages for various antibiotics: ampicillin (100%), gentamicin (15.38%), ciprofloxacin (34.61%), tetracycline (48.07%), bactrim (17.3%), meropenem (0.96%) and imipenem (0.96%). The analysis of resistance genes showed the presence of bla SHV (7.96%), qnrA (0.96%), tetA (20.19%), and dfrA1 (0.96%) genes, while the aac3, bla , and bla IMP genes were not detected.</p> <p><strong>Conclusion: </strong>The high rates of antibiotic resistance observed, particularly to ampicillin and tetracycline, highlight the need for more judicious antibiotic use and the development of alternative treatment strategies to combat UPEC infections. These results can inform antimicrobial stewardship programs and guide the selection of appropriate empiric therapy for urinary tract infections.</p>2025-04-12T10:05:22+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18387Phenotypic and genotypic characterization of carbapenemase-producing Escherichia coli clinical isolates in Thi-Qar, Iraq2025-04-20T12:26:39+00:00Moslim Mohsin Khalafnone@none.comFiras Srhan Abd Al-Mayahinone@none.com<p><strong>Background and Objectives:</strong> The emergence of carbapenem resistance in Escherichia coli (E. coli) poses an urgent threat. The study aims to assess carbapenem resistance and the presence of carbapenemase genes in E. coli clinical isolates from Thi-Qar Hospital, Iraq.</p> <p><strong>Materials and Methods:</strong> A total of 2203 specimens were collected from patients at two hospitals between January and October 2024. E. coli was identified via biochemical tests and confirmed with the Vitek2® system. Antibiotic sensitivity was evaluated using disc diffusion, and carbapenemase production was investigated through combined disc tests (CDT) and modified Hodge tests (MHT). PCR was used to detect carbapenemase genes.</p> <p><strong>Results:</strong> Out of 2203 specimens, 1212 (55.02%) exhibited bacterial growth, with E. coli accounting for 15.35% (186/1212) of isolates. Among these, 40 (21.51%) were resistant to at least one carbapenem. CDT identified 10, and MHT identi- fied 1 as a carbapenemase producer. The most detected gene was bla NDM (60.00%), followed by bla OXA (40.00%) and bla OXA-48 (15.00%). bla OXA-51 and bla VIM were found in 5.00% of isolates each. No bla KPC , bla , bla , bla , bla SPM bla , or bla SIM was detected.</p> <p><strong>Conclusion:</strong> The high prevalence of carbapenem resistance and the corresponding encoding genes in E. coli in Thi-Qar province pose a concerning challenge for managing serious infections caused by this pathogen.</p>2025-04-12T10:09:16+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18388Design of ELISA-based diagnostic system for detection of enterohaemorrhagic Escherichia coli2025-04-20T12:26:57+00:00Mohammad Javad Rezaeinone@none.comMaryam Eidinone@none.comSeyed Ali Mirhosseininone@none.comRouhollah Kazeminone@none.comMohammad Javad Motamedinone@none.comSoghra Khaninone@none.comJafar Amaninone@none.com<p><strong>Background and Objectives: </strong><em>Escherichia coli (E. coli) </em>O157:H7 is an intestinal pathogen of humans and animals, which causes serious gastrointestinal, urinary tract infection and hemolytic uremic syndrome. Connecting to the host cell is import- ant in pathogenesis. EspA, Intimin and Tir proteins (EIT) are the most important bacterial features in the process of binding. These antigens can be very useful in detecting these bacteria. The aim of this study was to produce recombinant EspA, In- timin and Tir proteins (rEIT) to detect pathogenic <em>E. coli </em>O157:H7 by means of ELISA method.</p> <p><strong>Materials and Methods: </strong>The <em>eit </em>recombinant gene was expressed using IPTG in <em>E. coli </em>BL21 (DE3) and evaluated by western blotting. The purified rEIT protein was injected to rabbits and mice subcutaneously. Purified antibody was evaluated using indirect, competitive and sandwich ELISA confirming the precise detection of <em>E. coli </em>O157: H7.</p> <p><strong>Results: </strong>Indirect, competitive and sandwich ELISA specifically detected <em>E. coli </em>O157:H7 and each methods had the ability to identify more than 104, 104, 103 bacteria. The specificity of this method was evaluated by Entroheamoragic <em>E. coli</em>, entero- toxygenic <em>E. coli, Klebsiella pneumoniae, Vibrio cholera </em>and <em>Acinetobacter</em>.</p> <p><strong>Conclusion: </strong>These methods are the fastest, most accurate and cost effective methods for diagnosis of <em>E. coli </em>O157: H7, comparing to the conventional methods.</p>2025-04-12T10:16:40+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18389Molecular assessment of Coxiella burnetii in horses in Northwestern Iran2025-04-20T12:27:13+00:00Somayyeh Hosseinzadehnone@none.comKatayoon Nofouzinone@none.comFaezah Hasanzadehnone@none.comSaber Esmaeilinone@none.comEsmail Ayennone@none.com<p><strong>Background and Objectives: </strong>Q fever is a frequently occurring illness that is induced by the bacterium <em>Coxiella burnetii (C. burnetii</em>) that can infect humans and various animals. It targets the macrophage cells in the tissues, and circulating monocytes.</p> <p><strong>Materials and Methods: </strong>This study was conducted between 2022 and 2023 in the West Azerbaijan and Ardabil provinces of northwestern Iran to examine the presence infection of <em>C. burnetii</em>. Specimens were obtained by swabbing from 140 mares (70 from each province) and 20 stallions (10 from each province) which were apparently healthy, and their DNA was ana- lyzed using quantitative PCR assay detecting the <em>IS1111 </em>element of the bacterium.</p> <p><strong>Results: </strong>The findings indicated that a mere 0.625% of the examined specimens tested positive for <em>C. burnetii</em>. Among the entire set of specimens, a single female horse from the region of Ardabil was found to be the carrier of the bacterium.</p> <p><strong>Conclusion: </strong>This suggested that even though horses may not display any clinical symptoms, they can still harbor <em>C. burnetii </em>and contribute to its transmission. Therefore, the potential contribution of horses to Q fever transmission should be consid- ered.</p>2025-04-12T10:21:34+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18395Evaluation of the antagonistic effect of Pseudomonas aeruginosa toxins on azole antifungal resistance in Candida albicans species isolated from clinical samples in Iran2025-04-20T12:27:31+00:00Masoumeh Sadat Hosseininone@none.comMasoumeh Navidinianone@none.comSima Sadat Seyedjavadinone@none.comMehdi Goudarzinone@none.comHelia Rasoulinone@none.comAmir Mohsen Mahdaviannone@none.comElina Rahimi Zamaninone@none.com<p><strong>Background and Objectives: </strong>The azole antifungals are the most frequent class used to treat <em>Candida </em>infections. It is essential to elucidate the potential of natural compounds as an alternative in eliminating <em>Candida albicans (C. albicans). </em>Therefore, in the present study, the antagonistic effect of <em>Pseudomonas aeruginosa </em>toxins on azole antifungal resistance in <em>C. albicans </em>species was investigated.</p> <p><strong>Materials and Methods:</strong> In this study, 28 C. albicans species with azole antifungal resistance were obtained from patients at Shohadaye Tajrish Hospital. The effect of toxins, such as phenazine, pyocyanin, pyoverdine, and fluorescein, was examined on C. albicans species. The antifungal activity of these toxins against C. albicans spp. was determined using methods such as minimal inhibitory concentration (MIC ), radial diffusion assay (RDA), and detection of reactive oxygen species (ROS).</p> <p><strong>Results: </strong>The prevalence of <em>C. albicans </em>strains in urinary catheters, surgical wounds, respiratory tracts, blood, and standard strains was 46.3%, 21.4%, 25%, 7.14%, and 3.57%, respectively. The MIC values were reported as 32 µg/ml for phenazine, and 128 µg/ml for pyoverdine, pyocyanin, and fluorescein. The results showed that phenazine exhibited higher inhibitory effects against <em>C. albicans </em>isolated from clinical samples compared to the other toxins. After exposure to phenazines (20 µg/ ml), 65-70% of yeast cells of <em>C. albicans </em>spp. showed rhodamine 123 fluorescence, indicating high intracellular reactive oxygen species (ROS) production.</p> <p><strong>Conclusion: </strong>The antifungal effect of different toxins in <em>C. albicans </em>spp. may be due to ROS-mediated apoptotic death. The results suggest that phenazine has high potential in controlling <em>C. albicans</em>. This natural compounds are a potential alternative for eliminating this yeast.</p>2025-04-12T11:00:46+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18397Antifungal effect of soil Bacillus bacteria on pathogenic species of the fungal genera Aspergillus and Trichophyton2025-04-20T12:27:48+00:00 Mahnour Alsadat Taghavinone@none.comMaryam Ahmadinone@none.comDavoud Dehghan-Nayerinone@none.comZahra Salehinone@none.comMasoomeh Shams-Ghahfarokhinone@none.comFatemehsadat Jamzivarnone@none.comMehdi Razzaghi-Abyanehnone@none.com<p><strong>Background and Objectives: </strong>The increasing prevalence of fungal infections due to antifungal resistance underscores the need for novel treatment strategies. The present study aimed to investigate the inhibitory effects of soil-originated antagonis- tic bacteria against <em>Aspergillus </em>and <em>Trichophyton </em>species.</p> <p><strong>Materials and Methods: </strong>Fifty soil samples collected from Isfahan and Khuzestan provinces by using the Zig-Zag method were cultured on glucose-yeast extract (GY) agar around fungal colonies to isolate antagonistic bacteria. Antifungal activity was assessed by measuring clear zones around the colonies of <em>A. niger, A. fumigatus, T. rubrum, </em>and <em>T. mentagrophytes </em>by co-culture linear method. Potent antagonistic bacteria were identified by 16S rRNA sequencing, and evaluated for antifungal activity using disk diffusion assays compared with amphotericin B and ketoconazole.</p> <p><strong>Results: </strong>Among 50 samples, fifteen showed antifungal effects, yielding 55 bacterial strains. Four isolates with strong anti- fungal activity against all tested fungi were identified as <em>Bacillus subtilis, B. licheniformis, B. axarquiensis, </em>and <em>Bacillus </em>sp. These bacteria were distributed in distinct clusters phylogenitically and showed diverse antifungal activity.</p> <p><strong>Conclusion: </strong>The results suggest the potential of soil-derived <em>Bacillus </em>species as promising antifungal agents. Further studies are recommended to identify their inhibitory metabolites, their ability as biocontrol agents against soil habitated fungi and to explore their mechanism of action and spectrum of activity.</p>2025-04-12T11:15:08+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18390Impact of oleuropein on Candida albicans and Staphylococcus aureus adhesion and its mediated toxicity in Zebrafish (Danio rerio) embryos2025-04-20T12:28:28+00:00Samira Karzaninone@none.comAghil Sharifzadehnone@none.comBahar Nayeri-Fasaeinone@none.comAli Reza Khosravinone@none.comJalal Hassannone@none.comAram Sharifinone@none.comAli Pourshaban Shahrestaninone@none.com<p><strong>Background and Objectives: </strong>The rising prevalence of antibiotic resistance and biofilm-associated infections poses signif- icant challenges in clinical settings. This study investigates the antimicrobial and anti-adhesive properties of oleuropein, a compound derived from olive leaves, against <em>Candida albicans </em>and <em>Staphylococcus aureus.</em></p> <p><strong>Materials and Methods: </strong>This study was conducted on <em>Candida albicans </em>(fluconazole-resistant/susceptible) and <em>Staphylo- coccus aureus </em>(methicillin-resistant/susceptible). The antifungal, antibacterial, anti-adhesion, and cell surface hydrophobic- ity (CSH) effects of oleuropein were evaluated. The impact of oleuropein on germ tube formation (GTF) in <em>C. albicans </em>was assessed. Finally, the toxicity of oleuropein was evaluated in zebrafish embryos.</p> <p><strong>Results: </strong>Oleuropein exhibited MIC values of 10 mg/ml for <em>C. albicans </em>and 5 mg/ml for <em>S. aureus</em>. It significantly (P< 0.05) reduced the adhesion of both microorganisms in a dose-dependent manner, with inhibition percentages of 78.43% and 75.91% for <em>C. albicans </em>and <em>S. aureus</em>, respectively. Additionally, oleuropein reduced the CSH of <em>C. albicans</em>, indicating its potential to interfere with adhesion mechanisms. In addition, oleuropein exhibited inhibition of GTF in <em>C. albicans. </em></p> <p><strong>Conclusion: </strong>Oleuropein demonstrates significant antimicrobial and anti-adhesive properties against <em>C. albicans </em>and <em>S. au- reus, </em>indicating its potential as a therapeutic agent for preventing biofilm-related infections. However, careful dosage man- agement is crucial due to its observed toxicity at higher concentrations.</p>2025-04-12T10:33:43+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18392Onychomycosis among cancer patients undergoing chemotherapy in Tehran, Iran: a cross-sectional study2025-04-20T12:28:46+00:00Fatemeh Fathinone@none.comFarhad Shahinone@none.comAlireza Khosravinone@none.comZahra Saffariannone@none.comNader Safariannone@none.comMir Saeed Yekaninejadnone@none.comZoha Shakanone@none.com<p><strong>Background and Objectives: </strong>Due to the persistence of residual fungal elements, onychomycosis tends to have a high recurrence rate. It is essential to determine the etiology and frequency of onychomycosis across various factors. This study aimed to assess the prevalence of onychomycosis and identify its fungal agents in cancer patients undergoing chemotherapy.</p> <p><strong>Materials and Methods: </strong>This cross-sectional study was conducted on cancer patients attending the Oncology Clinic and Cancer Institute of Tehran University of Medical Sciences. Among the 165 patients meeting the inclusion criteria, 75 individ- uals with nail alterations were referred to a dermatologist. Each patient's information, including demographics, disease-relat- ed data, and details about nail involvement, was recorded. When onychomycosis was suspected, nail samples were collected from the deepest part and examined using a light microscope after clarifying with 15% potassium hydroxide (KOH) to detect fungal elements.</p> <p><strong>Results: </strong>The prevalence of onychomycosis was 37.6% (n=62). Among the 75 patients with nail alterations and suspected onychomycosis, 17.3% (n=13) tested negative for pathogenic agents. The most common pathogen was <em>Candida albicans, </em>present in 21% (13/62) of patients with positive onychomycosis. The prevailing nail alteration was onycholysis, affecting 45.3% (34/75) of patients.</p> <p><strong>Conclusion: </strong>Onychomycosis exhibits associations with variables such as gender, age, cancer and chemotherapy.</p> <p> </p>2025-04-12T10:46:30+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18393Investigating the ability of Saccharomyces cerevisiae and Lactobacillus plantarum on the reduction of aflatoxin B , ochratoxin A, and zearalenone in dough and toast Bread2025-04-20T12:29:03+00:00Alireza Haji Amirinone@none.comLeila Nateghinone@none.comNazanin Zandnone@none.com<p><strong>Background and Objectives: </strong>Wheat and its derived products are high-risk commodities for aflatoxin contamination. The objective of this study was to investigate the effect of using Saccharomyces cerevisiae, Lactobacillus plantarum, and the dough fermentation and baking periods on reducing aflatoxin B (AFB ), ochratoxin A (OTA), and zearalenone (ZEA) toxins.</p> <p><strong>Materials and Methods: </strong>Toast bread flour contaminated with AFB , OTA and ZEA (10,10 and 400 ng/g) were separately treated with S. cerevisiae and L. plantarum (at a concentration of 108 CFU/g). The reduction of mycotoxins was examined immediately after dough preparation, at the end of fermentation, and after baking.</p> <p><strong>Results: </strong>The type of microorganism, fermentation and baking significantly affected the reduction of mycotoxins (AFB , OTA, and ZEA). After baking, neither AFB nor OTA were detected in any of the toast bread samples, with a 100% reduction observed in all treatments. In contrast, the percentage reduction of ZEA after baking compared with immediately after dough preparation ranged from 98.90% to 100%, and the percentage reduction of ZEA at the end of fermentation compared with immediately after dough preparation ranged from 97.80% to 99.57%.</p> <p><strong>Conclusion: </strong>The findings of this study suggest that <em>L. plantarum </em>and <em>S. cerevisiae </em>can be used as additives or processing agents to decrease mycotoxins in fermented wheat foods.</p>2025-04-12T10:52:14+00:00Copyright (c) 2025 Iranian Journal of Microbiologyhttps://publish.kne-publishing.com/index.php/IJM/article/view/18398Antifungal activity of polyphenolic compounds against fluconazole- susceptible and -resistant Candida species2025-04-20T12:29:20+00:00Harmed Fakhimnone@none.comBahar Mohamadinone@none.comShima Gharibinone@none.comMedhi Rahimmaleknone@none.comMahnaz Hosseini Rizinone@none.comMahsa Shelerangkonnone@none.comElahe Nasrinone@none.comFariba Dorostkarnone@none.comAntoni Szumnynone@none.comAfsane Vaezinone@none.com<p><strong>Background and Objectives: </strong>The rapid emergence of resistant fungi is occurring worldwide, and this crisis has been attributed to the lack of new antifungal drug development. This issue emphasizes the need for innovation in finding novel antifungals. There is an increasing interest in using the natural products of plants with high biological activity as alternatives to synthetic drugs. This study aimed to evaluate the possible applicability of polyphenols as alternative antifungal drugs to treat resistant <em>Candida </em>infections.</p> <p><strong>Materials and Methods: </strong>A panel of fluconazole-resistant (n=14) and fluconazole-susceptible (n=26) clinical <em>Candida </em>iso- lates was obtained from the reference culture collection. The determination of the minimum inhibitory concentrations (MICs) of fluconazole, tannic acid, rosmarinic acid, gallic acid, chlorogenic acid, caffeic, ferulic, and p-coumaric was carried out following the Clinical and Laboratory Standards Institute (CLSI) guidelines.</p> <p><strong>Results: </strong>The MIC values of 40 <em>Candida </em>species isolates ranged from 0.25 to >64 µg/mL for polyphenolic compounds. The highest inhibitory effect against <em>Candida </em>species was observed with tannic acid, followed by fluconazole. Non-<em>albicans Candida </em>groups were more sensitive to tannic acid compared to <em>C. albicans </em>isolates. Significant differences were observed in the MICs of fluconazole and tannic acid against non-<em>albicans Candida </em>isolates.</p> <p><strong>Conclusion: </strong>The increasing antifungal resistance highlights the importance of evaluating new drugs that are more robust against resistance. This study suggests that tannic acid could be considered a novel antifungal agent for managing fungal infections, including multidrug-resistant non-<em>albicans Candida </em>infections.</p>2025-04-12T11:22:44+00:00Copyright (c) 2025 Iranian Journal of Microbiology