https://publish.kne-publishing.com/index.php/ABI/issue/feedActa Biochimica Iranica2025-03-16T09:20:11+00:00Mohadeseh Davvarim.davvari@knowledgee.comOpen Journal Systems<p><strong>Acta Biochimica Iranica </strong>(ABI) is the official scientific publication of the <strong>Iranian Society of </strong><strong>Biochemistry </strong>which is published by<a href="https://journals.tums.ac.ir/en"> Tehran University of Medical Sciences</a><strong>.</strong> ABI publishes reviews, research articles, communications, and letters in all areas of areas of Biochemistry, Molecular and Cellular Biology, Structural Biology, Disease Biology, Chemical Biology, Genetics, Genomics and Biotechnology.</p> <p><strong>All the manuscripts should be submitted through the Journal Primary Website at:</strong></p> <p><a href="https://abi.tums.ac.ir/index.php/abi/about/submissions">https://abi.tums.ac.ir/index.php/abi/about/submissions</a></p>https://publish.kne-publishing.com/index.php/ABI/article/view/17931Intestinal microbiota and gastrointestinal diseases: Irritable Bowel Syndrome2025-03-16T09:17:42+00:00Fataneh Esmaeilinone@none.comMehrnoosh Shanakinone@none.com<p>Gastrointestinal microbiota, also known as “microflora,” is a collection of microorganisms that inhabit the gastrointestinal tract. Under normal circumstances, the microbiota helps maintain intestinal homeostasis. However, some resident bacteria can transition from symbionts to pathobionts, leading to the development and progression of gastrointestinal diseases such as functional dyspepsia, severe diarrhea, inflammatory bowel disease (IBD), and irritable bowel syndrome (IBS). IBS is a chronic gastrointestinal disorder characterized by abdominal pain and altered bowel habits, including cramping, gas, and constipation. This mini-review will briefly describe microbiota, IBS, the interrelationship between IBS and microbiota, and the therapeutic use of microbiota in treating IBS.</p>2025-02-23T08:01:00+00:00Copyright (c) 2025 Acta Biochimica Iranicahttps://publish.kne-publishing.com/index.php/ABI/article/view/17932The expression of sirtuins in breast cancer and their prognostic and clinicopathological significance: a systematic review2025-03-16T09:17:57+00:00Ehsan Naserinone@none.comZohreh Abdolvahabi none@none.comBanafsheh Safizadehnone@none.comHannaneh Zarrinnahad none@none.comYousef Moradinone@none.comMarzieh Soheilinone@none.comHamid Reza Baradarannone@none.comMitra Nourbakhsh none@none.com<p><strong>Objectives:</strong> Sirtuins (SIRTs) are a highly conserved family of enzymes that play an important role in cancer emergence and progression, including breast cancer. In this review, changes in the expression of different SIRTs in breast cancer and their association with metastasis and cancer grade were investigated.</p> <p><strong>Methods:</strong> This study was performed on 44 selected articles on breast cancer, which were extracted from PubMed, Scopus, and Web of Science. Among the selected articles, there were 31 case-control and 13 cohort studies with a total of 7326 and 4760 participants, respectively.</p> <p><strong>Results:</strong> In most studies, SIRT1, SIRT5, and SIRT7 expression levels were higher than the controls, while the expression levels of SIRT4 and SIRT6 were lower. Elevated levels of SIRT1 were associated with an increased risk of distant metastatic relapse (DMR), death, and recurrence, as well as reduced relapse-free survival (RFS). Additionally, there was a significant correlation between increased levels of SIRT1 and metastasis of lymph nodes and other tissues. Reduced levels of SIRT4 were associated with decreased overall survival (OS).</p> <p><strong>Conclusion:</strong> Our findings suggest that elevated levels of SIRT1, SIRT5, and SIRT7 may have potential value for use in the diagnosis of breast cancer. Increased levels of SIRT1 can be used as a prognostic marker.</p>2025-02-23T08:22:26+00:00Copyright (c) 2025 Acta Biochimica Iranicahttps://publish.kne-publishing.com/index.php/ABI/article/view/17934Saffron has a therapeutic effect on nephropathy by regulating the expression of TLR4, S100A8, and HMGB1 genes and reducing oxidative stress in diabetic rats2025-03-16T09:18:13+00:00Abbas Alimoradiannone@none.comHadi Karaminone@none.comSeied Amirhossein Latifinone@none.comAli Ghazavi none@none.comAhmad Akbari none@none.comZahra Pilevarnone@none.comJamal Amrinone@none.com<p><strong>Objectives:</strong> Diabetic nephropathy (DN) is a major complication of diabetes that requireseffective treatment options. This study explores the potential benefits of saffron extractas a remedy derived from medicinal plants, focusing on its effects on key inflammatorygenes—Toll-like receptor 4 (TLR-4), S100 calcium-binding protein A8 (S100A8), andHigh Mobility Group Box 1 (HMGB1)—as well as its role in reducing oxidative stressin the kidney tissue of rats with type 1 diabetes.</p> <p><strong>Methods:</strong> The rats were randomly divided into 8 groups of 6 each. Diabetes was inducedusing streptozotocin (55 mg/kg.bw). Diabetic and control groups were treated with threedoses of saffron extract (100, 200, and 300 mg/kg) for 60 days. Biochemical kits wereused to evaluate fasting blood glucose (FBG), urea, creatinine, albumin, lipid profile,malondialdehyde (MDA), and total antioxidant capacity (TAC). Expression of TLR-4,S100A8, and HMGB1 genes were evaluated by real-time PCR. ANOVA and Bonferronipost-hoc tests were used for data evaluation.</p> <p><strong>Results:</strong> Diabetes significantly impaired the FBG, lipid profile, creatinine, urea, andalbumin levels (P<0.05). After treatment with the saffron extract, these parameterswere significantly close to the normal range in all groups compared to the control group(P<0.05). Also, the saffron extract significantly decreased the expression levels of TLR-4, S100A8, and HMGB1 genes and improved oxidative stress markers (TAC and MDA)in kidney tissues when compared to the diabetic control group (P<0.05). In addition, thebeneficial effects of saffron were dose-dependent.</p> <p><strong>Conclusion:</strong> Based on the obtained results, saffron extract can lead to the improvementof nephropathy by reducing the expression of TLR-4, S100A8, and HMGB1 genes aswell as improving oxidative stress. Thus, it may be used as an adjuvant treatment fordiabetic complications.</p>2025-02-23T08:58:01+00:00Copyright (c) 2025 Acta Biochimica Iranicahttps://publish.kne-publishing.com/index.php/ABI/article/view/17935Efficacy of intravenous immunoglobulin therapy in hospitalised patients with COVID-19: A randomized controlled trial2025-03-16T09:18:57+00:00Behrooz Ghezelbashnone@none.comAlireza Mafinone@none.comMehdi Rostaminone@none.comNegah Tavakolnone@none.comRaziyeh Salaminone@none.comYasaman Gholinezhadnone@none.comMohammadreza Kasravinone@none.comAlireza Rajbzadehnone@none.comNahid Eskandarinone@none.com<p><strong>Objectives:</strong> Acute respiratory distress syndrome (ARDS) is one of the life-threateningcomplications of COVID-19. The occurrence of ARDS is due to overactivation of thehost immune response to the virus. The purpose of this study is to investigate whetheradministration of intravenous immunoglobulins (IVIG) could enhance the outcomes ofseverely ill COVID-19 patients with ARDS.</p> <p><strong>Methods:</strong> In this randomized controlled trial at Milad Hospital of Isfahan, Iran, 88patients were randomly assigned between May and October 2020. The patients had nosignificant differences in age and sex. The patients were divided into two groups: thegroup who received IVIG and routine treatment (n=44, 50%) and the control group whowere just treated with routine treatment (n=44, 50%). The outcomes of patients, includinghospitalization duration, ICU admission period, and total death occurrence, besides clinicaland laboratory parameters, were followed and compared between the two groups.</p> <p><strong>Results:</strong> Primary outcomes of patients, including hospitalization duration (P=0.18),ICU admission period (P=0.35), and mortality (P=0.621), had no significant differencebetween the IVIG group and the control group. At day 3 and day 5 of IVIG administration,clinical and laboratory outcomes were screened. The clinical parameter that improvedwas oxygen saturation compared to the control group (87.56 ± 6.72 vs. 86.72 ± 7.52).In the cardiovascular system, IVIG significantly decreased diastolic blood pressure(P=0.02). In terms of coagulation parameters, IVIG treatment decreased PTT while itincreased D-dimer, but no effect on platelet count and PT was seen. The inflammatoryparameters, including ESR, CRP, and IL6, had no superior changes between the IVIGgroup and the control group.</p> <p><strong>Conclusion:</strong> Our study demonstrated that there were no superior advantages inCOVID-19 patients with ARDS who were treated with IVIG..</p>2025-02-23T09:33:27+00:00Copyright (c) 2025 Acta Biochimica Iranicahttps://publish.kne-publishing.com/index.php/ABI/article/view/17936Alpha 1-antitrypsin as a potent biomarker for monitoring of disease severity in patients with Covid-19 and its correlation with Liver Enzymes and Lactate Dehydrogenase2025-03-16T09:19:16+00:00Mohammad Salehinone@none.comAbbas Sahebghadam Lotfinone@none.com<p><strong>Objectives:</strong> Alpha 1-antitrypsin (A1AT) is a single-chain glycoprotein containing 394 amino acids. It is primarily synthesized in the liver as an acute phase protein. According to recent studies, the COVID-19 virus can infect host cells by binding to the ACE2 receptor via a membrane protein. On the other hand, A1AT has the potential to inhibit neutrophil elastase and prevent the entry of the virus into host cells. Consequently, A1AT can reduce the severity and duration of COVID-19 disease</p> <p><strong>Methods:</strong> Thirty-one hospitalized COVID-19 patients with a positive PCR test and thirty healthy volunteers with a negative test as the control group were selected. Upon hospitalization, demographic and biochemical tests were conducted for both patients and controls. Serum A1AT levels in both groups were measured using nephelometry as the reference method. Liver enzymes and total protein were also determined using commercially available kits.</p> <p><strong>Results:</strong> Serum A1AT levels in the patients were increased compared to the control group, and this increase was inversely proportional to the duration of hospitalization and the relative improvement for discharge. Additionally, this elevation was correlated with qualitative C-reactive protein (CRP) levels. Serum liver enzymes, ALP, and LDH in patients were significantly higher than in the controls (P<0.05), while serum total protein in patients was significantly lower than in the controls (P<0.05).</p> <p><strong>Conclusion:</strong> These data belong to a homologous group and show a correlation between serum A1AT levels and the duration of hospitalization, as well as with qualitative CRP levels. Furthermore, the increase in A1AT is proportional to the levels of serum AST, ALT, total protein, ALP, and LDH, which may serve as an alarm for potential liver involvement in such a disease. Thus, monitoring the liver condition is warranted.</p>2025-02-23T09:38:39+00:00Copyright (c) 2025 Acta Biochimica Iranicahttps://publish.kne-publishing.com/index.php/ABI/article/view/17938The Inhibitory Effects of Hesperetin, a Natural Flavonoid, against Substance P-induced Inflammatory Responses in Glioblastoma Cells2025-03-16T09:19:30+00:00Ali Alieenone@none.comSeyed Isaac Hashemynone@none.comSafieh Ebrahiminone@none.com<p><strong>Objectives:</strong> As a key inflammatory neuropeptide, substance P (SP) is involved in Glioblastoma multiforme (GBM) carcinogenesis and tumor progression. Thus, the proinflammatory effects of SP must be strictly regulated in GBM patients. The purpose of the study is to examine whether Hesperetin, a natural flavonoid found in citrus fruits with strong anti-inflammatory and anticancer effects, can regulate SP-induced inflammation in GBM primary human cells</p> <p><strong>Methods:</strong> The primary human cells were derived from fresh surgically resected tissue samples of GBM patients and characterized by immunocytochemical analysis of Ki-67. MTT assay was used to evaluate cell proliferation. Apoptosis was detected by an Annexin-V/propidium iodide assay kit using flow cytometry. The levels of the specific inflammatory mediators were measured by western blotting and enzyme-linked immunosorbent assay.</p> <p><strong>Results:</strong> We observed that Hesperetin effectively reduced GBM cell viability in a dose- dependent manner, which was associated with the induction of apoptosis. Obtained findings indicated SP increased the protein expression of phosphorylated-NF-κB, the main regulator of inflammatory processes, and the pro-inflammatory cytokines (IL-1β, TNF-α), while Hesperetin treatment reduced the effects of SP.</p> <p><strong>Conclusion:</strong> Taken together, our findings highlight the role of SP-induced inflammatory responses in GBM pathology and suggest that Hesperetin could be an effective therapeutic strategy in attenuating SP-associated inflammation.</p>2025-02-23T10:14:57+00:00Copyright (c) 2025 Acta Biochimica Iranicahttps://publish.kne-publishing.com/index.php/ABI/article/view/17939Hemostatic Properties of Green Hydrogel Synthesized from Chitosan/Gelatin Polymers and Hydroalcoholic Extract of Juglans Regia L: An In-Silico and In-Vitro Study2025-03-16T09:20:11+00:00Mahta Sahraiannone@none.comFatemeh Delavariannone@none.comMaryam Davoudinone@none.comMostafa Saberian none@none.comReza Afrishamnone@none.com<p><strong>Objectives:</strong> Quercetin-3-O-rhamnoside, an effective antioxidant, exists in walnut leavesand is supposed to maintain the structural integrity of the Band 3 protein of red bloodcells (RBCs). In this context, an attempt was made to explore the in-silico and in-vitrohemostatic effects of chitosan/gelatin hydrogels containing hydro-alcoholic extract ofIranian walnut leaves (Juglans regia L.), rich in quercetin-3-O-rhamnoside.</p> <p><strong>Methods:</strong> In-silico molecular docking predicted the potential interaction betweenquercetin-3-O-rhamnoside and Band 3 protein. Hydroalcoholic extraction (1:1 water:70% ethanol) of walnut leaves was performed in a Soxhlet extractor. The hemostaticactivity from various extract concentrations (0%, 2.5%, 5%, 10%, and 20% v/v) wasassayed using the prothrombin time test on citrated blood samples. Gelatin/Chitosanhydrogels (3:1 and 2:1) loaded with the hemostatic concentrations were prepared bythe casting method, and their adhesion ability to RBCs was tested by measuring theconcentration of free hemoglobin in comparison with controls such as sterile gauze andfree-hydrogel positive controls.</p> <p><strong>Results:</strong> Quercetin-3-O-rhamnoside exhibited a high affinity for Band 3 protein,presenting a binding energy of -8.39 kcal/mol compared to the standard ligand 4KUwith -7.11 kcal/mol. The nine amino acids found to be important in this interactioninclude THR728, SER465, VAL729, ARG730, ILE531, LYS851, ILE528, PHE532, andPHE792. All hydrogels incorporating 2.5% v/v of extract could significantly enhanceRBC adhesion controls (p < 0.05).</p> <p><strong>Conclusion:</strong> The hydroalcoholic extract from Juglans regia L. may be of value as anantioxidant and hemostatic agent. Quercetin-3-O-rhamnoside is suggested to be extractedfrom walnut leaves and directly incorporated into the hydrogel, and its hemostatic andantioxidant properties can be investigated at both in vitro and in vivo levels</p>2025-02-23T10:34:50+00:00Copyright (c) 2025 Acta Biochimica Iranica